DNA Damage Atlas

GSM5261774-XR-Seq_A2780cis

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14310035,SRR14310036


Source Project ID:   

GSE173201

Cell Type:   

A2780cis


Organism:   

Homo sapiens


Treatment:   

Cisplatin


Treatment Time:   

3hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28262286092843432.5347/
chrUn_gl00022315144515176415160323.3371/
chr1210924348210924506410924460916.7029/
chrUn_gl00022012996613022913009615.8639/
chr341261692412619324126181115.339/
rDNA31730319493183814.9421/
rDNA27583251305214.7686/
rDNA12778146571400513.8016/
chr1965324316535777653319313.5939/
chr133811677338120763381187512.9171/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab