DNA Damage Atlas


GSM5291223-WT_aCD40-TGF_Sg3_2




Basic Information

Manual

Sample ID:   

SRR14507397


Source Project ID:   

GSE174296

Cell Type:   

Splenic mature B cells


Organism:   

Mus musculus


Treatment:   

cytokine stimulation;anti-CD40+TGFb


Treatment Time:   

96 hrs


Genotype:   

WT


Targeted break:   

Sg3


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

CSR-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr790441810904420329044202064143.5-
chr513698261613698283313698282562586.9-
chr1012176305912176328912176327860123-
chr1445812648458128724581285857691.4-
chr1345398609453988254539861657541.7+
chr410867897810867919010867918656297.8-
chr510407215810407237010407236352803.5-
chrX14551502914551524114551503452803.5+
chr713059157113059178213059157350323+
chr1122973014229732212297321447319.1-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr513698261713698283313698282568070.9-
chr790441810904420279044202064803.7-
chrX14551503014551523814551503462992.3+
chr1345398609453988254539861658377.9+
chr1012176306512176328512176327857046.6-
chr510407216310407237010407236355051.1-
chr1445812648458128714581285853719.1-
chr410867898110867918910867918651858.9-
chr713059157113059178113059157351477.1+
chr1122973014229732212297321449287.5-
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab