DNA Damage Atlas

GSM5291224-WT_aCD40-TGF_Sg3_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14507398


Source Project ID:   

GSE174296

Cell Type:   

Splenic mature B cells


Organism:   

Mus musculus


Treatment:   

cytokine stimulation;anti-CD40+TGFb


Treatment Time:   

96 hrs


Genotype:   

WT


Targeted break:   

Sg3


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

CSR-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr513698261713698283313698282573634.9-
chrX14551502714551523814551503467156.6+
chr790441810904420279044202063078.6-
chr1345398605453988284539861657923.4+
chr1012176306512176328512176327557398.7-
chr713059157113059178113059157353705.7+
chr510407216310407237010407236353552.7-
chr1122973014229732232297321452579-
chr410867898110867918910867918651441.5-
chr1445812648458128714581285851439.4-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr513698261713698283313698282568070.9-
chr790441810904420279044202064803.7-
chrX14551503014551523814551503462992.3+
chr1345398609453988254539861658377.9+
chr1012176306512176328512176327557046.6-
chr510407216310407237010407236355051.1-
chr1445812648458128714581285853719.1-
chr410867898110867918910867918651858.9-
chr713059157113059178113059157351477.1+
chr1122973014229732212297321449287.5-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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