DNA Damage Atlas

GSM5315989-CtIPA_PKKO_CJ_G2_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR14554375


Source Project ID:   

GSE174496

Cell Type:   

v-Abl transformed B-cell


Organism:   

Mus musculus


Strain:   

129


Treatment:   

STI571 + RO3306


Treatment Dose:   

3 µM STI571 + 10 uM RO3306


Genotype:   

CtIP A/A DNA-PKcs -/-


Cell Phase:   

G2


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Others:   

sample type: CJ


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9113261447113261684113261451193635+
chr1738533847385362973853607104934-
chr713190176213190198313190176548923.6+
chr1342436749424369854243675148868.3+
chr415315285815315328215315316746467.1-
chr1693597927935981389359793044409.9+
chr119986352199866521998636140845.7+
chr812396148212396176612396148334686.7+
chr1311060304411060330811060304534584.2+
chr1793046264930465049304650333037-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9113261449113261681113261451144840+
chr173853385738536297385360767887.9-
chr119986352199865741998636139536.2+
chr713190176513190198313190176535853+
chr415315287215315328215315316732214.5-
chr812396148312396171912396148331591.3+
chr1693597930935981389359793031291.2+
chr996852896968532029685320227644.1-
chr1342436751424369854243675127149.7+
chrX17075805217075832517075829626895.5-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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