DNA Damage Atlas

GSM5315990-CtIPA_PKKO_CJ_G2_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR14554376


Source Project ID:   

GSE174496

Cell Type:   

v-Abl transformed B-cell


Organism:   

Mus musculus


Strain:   

129


Treatment:   

STI571 + RO3306


Treatment Dose:   

3 µM STI571 + 10 uM RO3306


Genotype:   

CtIP A/A DNA-PKcs -/-


Cell Phase:   

G2


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Others:   

sample type: CJ


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr911326144911326168111326145192908.5+
chr173853385738536307385360731730-
chr119986351199865741998635525353+
chr812396148312396171912396148322459.1+
chrY90812765908132479081322620527-
chr1452055510520559795205577419589.1+
chr713190176513190204613190176518862.5+
chr1151455564514559665145576618458.9+
chr1693597930935981489359793017829.9+
chr1878198350781985827819837416754+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9113261449113261681113261451144840+
chr173853385738536297385360767887.9-
chr119986352199865741998635539536.2+
chr713190176513190198313190176535853+
chr415315287215315328215315303732214.5+
chr812396148312396171912396148331591.3+
chr1693597930935981389359793031291.2+
chr996852896968532029685316827644.1-
chr1342436751424369854243675127149.7+
chrX17075805217075832517075825226895.5-
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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