DNA Damage Atlas

GSM5315994-PKKO_CJ_G2_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14554380


Source Project ID:   

GSE174496

Cell Type:   

v-Abl transformed B-cell


Organism:   

Mus musculus


Strain:   

129


Treatment:   

STI571 + RO3306


Treatment Dose:   

3 µM STI571 + 10 uM RO3306


Genotype:   

DNA-PKcs -/-


Cell Phase:   

G2


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Others:   

sample type: CJ


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9113261448113261686113261451215765+
chr1738533857385363273853607110587-
chr713190176113190198113190176547180.4+
chrX17075805317075833017075829646346.7-
chr119986355199866071998635539021.3+
chr415315288415315323915315309036932.9-
chrX12905655412905681312905655433748.2+
chr812396148312396173812396148331064.1+
chr580500856805010998050086023605.5+
chr911535083711535110411535087323529.7+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9113261448113261664113261451240498+
chr1738533867385362673853607117638-
chrX17075805317075833017075829642900.7-
chr713190176413190198013190176542855.2+
chr119986355199866071998635534522.9+
chr415315288615315323915315309034051.2-
chr812396148312396173312396148331815.8+
chrX12905655412905680312905655429368.7+
chr580500859805010848050086027085.6+
chr1311060304511060330511060304526751.7+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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