DNA Damage Atlas

GSM5387597-U2OS_24hpd_hu_gh2ax_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14828159


Source Project ID:   

GSE178316

Cell Type:   

Epithelial (tissue:Bone; disease: Osteosarcoma)


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea


Treatment Time:   

12hrs


Treatment Dose:   

1mM


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM5387599-U2OS_24hpd_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4007995998.25112/
chr176199400061995999619949992.94387/
chr31744300017443799174433992.88428/
chr146994440069944999699446992.26716/
chr88379280083793399837930992.26716/
chr21217800121859912181992.16321/
chr223791180037912399379120992.12976/
chr26258900062589999625894991.9361/
chr177430360074304399743039991.90568/
chr12349122002349189992349155991.88845/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA4007995998.25112/
chr176199400061995599619949993.44867/
chr121108248001108253991108252992.47327/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab