DNA Damage Atlas


GSM5387597-U2OS_24hpd_hu_gh2ax_1




Basic Information

Manual

Sample ID:   

SRR14828159


Source Project ID:   

GSE178316

Cell Type:   

Epithelial (tissue:Bone; disease: Osteosarcoma)


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea


Treatment Time:   

12hrs


Treatment Dose:   

1mM


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM5387599-U2OS_24hpd_input


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4007995998.25112/
chr176199400061995999619949992.94387/
chr31744300017443799174433992.88428/
chr146994440069944999699446992.26716/
chr88379280083793399837930992.26716/
chr21217800121859912181992.16321/
chr223791180037912399379120992.12976/
chr26258900062589999625894991.9361/
chr177430360074304399743039991.90568/
chr12349122002349189992349155991.88845/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA4007995998.25112/
chr176199400061995599619949993.44867/
chr121108248001108253991108252992.47327/
Download the Full Merged Peak List



Motif Analysis

Manual





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