Sample Detail

Basic Information

Manual

Sample ID:

SRR14828160

Source Project ID:

GSE178316

Cell Type:

Epithelial (tissue:Bone; disease: Osteosarcoma)

Organism:

Homo sapiens

Treatment:

Hydroxyurea

Treatment Time:

12hrs

Treatment Dose:

1mM

Layout:

SINGLE

Instrument model:

NextSeq 500

Technique:

ChIP-seq (anti-γH2AX)

Others:

control: GSM5387599-U2OS_24hpd_input

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrM	0	16399	8199	39.0666	/
chr3	17443400	17443799	17443599	18.48	/
rDNA	400	799	599	8.448	/
chrX	124485000	124485199	124485099	7.41058	/
chr17	61994000	61995599	61994799	7.21344	/
chr7	22626600	22626799	22626699	6.88125	/
chr2	155433600	155433799	155433699	6.08726	/
chrX	53039600	53039799	53039699	6.08726	/
chr2	223197400	223197599	223197499	5.8226	/
chr7	157253400	157254399	157253899	5.53568	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr3	17443400	17443799	17443599	18.48	/
chr7	157253800	157254399	157253899	8.79266	/
rDNA	400	799	599	8.448	/
chr17	61994000	61995599	61994799	7.21344	/
chr12	110824800	110825399	110825099	4.66011	/
chr2	1217800	1218599	1218199	3.42771	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download