DNA Damage Atlas

GSM5387615-293_pHelp_AAV_24hpi_gh2ax_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14828177


Source Project ID:   

GSE178316

Cell Type:   

Epithelial (tissue: Kidney)


Organism:   

Homo sapiens


Treatment:   

AAV2 24hpi


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819947.7387/
rDNA12600149991379921.1269/
rDNA16003199239918.016/
rDNA40079959917.7418/
rDNA44200445994439912.6903/
rDNA28400287992859910.103/
rDNA1000011599107998.02417/
rDNA5400899971997.52624/
chr31744340017443799174435993.573/
rDNA3120031999315993.50701/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819947.7387/
rDNA12600149991379921.1269/
rDNA16003199239918.016/
rDNA40079959917.7418/
rDNA44200445994439912.6903/
rDNA28400287992859910.103/
rDNA5400799971999.93028/
rDNA4160042199419994.18554/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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