DNA Damage Atlas


GSM5387618-293_mock_gh2ax_2




Basic Information

Manual

Sample ID:   

SRR14828180


Source Project ID:   

GSE178316

Cell Type:   

Epithelial (tissue: Kidney)


Organism:   

Homo sapiens


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM5387619-293_mock_input


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819927.6934/
rDNA12600149991379910.0323/
rDNA4007995998.29097/
rDNA1600319923997.81067/
rDNA4160042399419995.6404/
rDNA4420044599443995.04668/
rDNA5400799966994.38113/
rDNA2720028799279993.91283/
rDNA1000011599107993.32815/
rDNA3120032599318993.23849/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819927.6934/
rDNA12600147991379910.7486/
rDNA4007995998.29097/
rDNA4160042399419995.6404/
rDNA2720028799279993.91283/
rDNA3120032599318993.23849/
rDNA2260024799236991.72239/
chr157202780072028999720279991.71941/
chr81397540001397555991397548991.58912/
Download the Full Merged Peak List



Motif Analysis

Manual





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