DNA Damage Atlas

GSM5387621-U2OS_rAAV_24hpi_gh2ax_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14828183


Source Project ID:   

GSE178316

Cell Type:   

Epithelial (tissue:Bone; disease: Osteosarcoma)


Organism:   

Homo sapiens


Treatment:   

rAAV2 24hpi


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM5387623-U2OS_rAAV_24hpi_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819932.0783/
rDNA12600155991409917.7325/
rDNA54009199729911.243/
rDNA44200445994439910.9158/
rDNA4003199179910.4347/
rDNA1000011599107998.99549/
chr224243920042439599424393992.47669/
chr54306640043067599430669992.47256/
chr145258060052580999525807992.38496/
chr76379800638019963799992.38496/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819932.0783/
rDNA12600149991409922.0149/
chr81260738001260741991260739992.29323/
chr31744340017443799174435992.2015/
chr88456360084563999845637992.2015/
chr81431560001431565991431562991.89416/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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