DNA Damage Atlas

GSM5394109-PDX119ZT08Xenograft

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14871656


Source Project ID:   

GSE178585

Cell Type:   

Xenograft


Organism:   

Homo sapiens


Strain:   

NOD.CB17-PrkdcSCID-J


Treatment:   

Cisplatin


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr199116399142579126547.65884/
chr192012500201725120148457.02386/
rDNA2796329078284636.93623/
chr101049519731049534611049528736.35252/
chr177312398773129285731274916.19054/
chr177371603573722154737174536.10893/
chr81770956177421717733805.88517/
chr101034527141034561061034543815.82677/
chr71507562221507607571507580595.77935/
chr206225741462260301622587515.45696/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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