DNA Damage Atlas

GSM5394114-PDX119ZT16Liver

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14871661


Source Project ID:   

GSE178585

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

NOD.CB17-PrkdcSCID-J


Treatment:   

Cisplatin


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM368213161185.496/
chrUn_JH5843045653561987598159.00898/
chr91244384511244433131244402177.48274/
chr54323164643236282432338147.31121/
chr95699367956997262569954257.10907/
chr96433926464342463643407417.10591/
chr112123774621240648212392277.06383/
chr21044924051044954191044942046.98652/
chr27297799972982045729797446.75957/
chr11784050851784073941784061396.70243/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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