DNA Damage Atlas

GSM5494642-HeLa-S3_WT_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR15324464


Source Project ID:   

GSE181312

Cell Type:   

HeLa


Organism:   

Homo sapiens


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

CLAPS-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM143851484314429690.371-
chrM139731435614266575.26-
rDNA282492879728731148.133-
rDNA232092376923620118.419-
rDNA317323242231852113.113+
rDNA31069314373138993.0537-
chrUn_gl00022013164413198413186572.598-
rDNA41960423434207067.1704+
chrUn_gl00022013284413315113312866.8127-
chrUn_gl00022012711312745712742938.9088-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM139731435614266978.871-
chrM143851484314429858.978-
rDNA282492873628731173.829-
rDNA232092371623620129.644-
rDNA317323241731852111.562+
rDNA31071314293138994.6103-
chrUn_gl00022013164413197513186573.7572-
chrUn_gl00022013284413312813312853.7355-
chrUn_gl00022012711312745312742953.0045-
chrUn_gl00022012082312113612105847.7787-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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