DNA Damage Atlas

GSM5494645-HeLa-S3_VITRO_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR15324467


Source Project ID:   

GSE181312

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

KBrO3 + GSH


Treatment Time:   

80mins


Treatment Dose:   

1mM + 2mM


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

CLAPS-seq


Others:   

condition: vitro


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA282692871328572156.668-
rDNA23317236312362186.4125-
rDNA19075193851935242.1723-
chrUn_gl00022012082612113012083541.3819+
chrUn_gl00022012712012743212742932.6783-
chrUn_gl00022012364712396312388825.2393-
chr535848503585306358494710.8188+
chr52160489216114521607428.5231-
chr51198986119981811993028.49899-
chr91376183831376187911376184928.46411+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA282692862528572115.469-
rDNA23317236312362192.1936-
chrUn_gl00022012082612113012083539.1243+
chrUn_gl00022012712012743112742933.2317-
chr535848503585306358494711.2651+
chr157074169970742002707417349.13632+
chr51198986119966711993028.3973-
chr91321576451321582081321576868.14542+
chr172131039421310775213105207.66314-
chrUn_gl0002373479380934897.48768+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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