DNA Damage Atlas

GSM5508955-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-T4

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR15369936


Source Project ID:   

GSE181667

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin + T4 DNA Pol


Treatment Dose:   

5uM APH


Genotype:   

Lig4-/-


Harvested Time:   

asisi induction: 18hrs


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr82866153728661540/207/
chr15944992759449930/149/
chr107495174574951748/138/
chr42249506222495065/138/
chr97561012375610126/138/
chr114971218649712189/115/
chr76800318768003190/115/
chr10109012313109012316/103/
chr103650753236507535/103/
chr1038887043888707/103/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr23022820930228212/147.365/
chr2127372952127372955/136.855/
chr73071577330715776/123.439/
chr15944992759449930/122.469/
chr107495174574951748/116.73/
chr131856233818562341/112.928/
chr6122487040122487043/106.22/
chr14122462911122462914/104.952/
chr127684084776840850/99.511/
chr5115895432115895435/99.511/
Download the Full Merged Peak List


Visualization

Manual





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