DNA Damage Atlas

GSM5508968-PreB-Lig4-53BP1-18hrs-AsisI-SARseq-clone2-APH

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR15369949


Source Project ID:   

GSE181667

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Dose:   

5uM


Genotype:   

Lig4-/-53BP1-/-


Harvested Time:   

asisi induction: 18hrs


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr74356261943562622/8006/
chr28472732584727328/7635/
chr4141537356141537359/6892/
chr132197482021974823/5938/
chr4107179185107179188/4294/
chr3116808386116808389/3870/
chr38918799989188002/3817/
chr1972062827206285/3711/
chrX1324203113242034/3499/
chr5137786946137786949/2969/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr28472732584727328/10207.9/
chr74356261943562622/9924.37/
chr4141537356141537359/7696.77/
chr132197482021974823/7336.88/
chr3116808386116808389/6009.89/
chr38918799989188002/5954.06/
chr4107179185107179188/5899.49/
chr1972062827206285/5637.21/
chr5137786946137786949/4767.74/
chr4155831545155831548/4111.89/
Download the Full Merged Peak List


Visualization

Manual





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