DNA Damage Atlas

GSM5508981-PreB-Lig4-18hrs-AsiSI-RPA-SSDS-APH-rep2

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR15369969


Source Project ID:   

GSE181668

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Dose:   

5uM


Genotype:   

Lig4-/-


Harvested Time:   

18hrs


Cell Phase:   

G0/G1


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

ChIP-seq (anti-RPA)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr48488476684884769/1523/
chr8117256843117256846/846/
chr83609468436094687/677/
chr17152103571521038/508/
chr9106247876106247879/338/
chr10115879071115879074/169/
chr102471811824718121/169/
chr1166011794166011797/169/
chr1184732391184732394/169/
chr14112083492112083495/169/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr17152103571521038/969.175/
chr1166011794166011797/174.036/
chr161634506216345065/174.036/
chr175625673756256740/174.036/
chr178883503888835041/174.036/
chr36785259367852596/174.036/
chr4141537356141537359/174.036/
chr89466671694666719/114.427/
chr57329285273292855/58.0119/
Download the Full Merged Peak List


Visualization

Manual





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