DNA Damage Atlas


GSM5508995-PreB-Lig4-12hrs-AsiSI-ENDseq-control-for-APH-POLAi




Basic Information

Manual

Sample ID:   

SRR15370004


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Targeted break:   

AsisI (12hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.028709



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/560242/
chr3116808386116808389/552925/
chr38918799989188002/511625/
chr3146812666146812669/471091/
chr167637344976373452/402668/
chr21899744618997449/365442/
chr57329285273292855/359291/
chr119820368398203686/354084/
chr137570811275708115/342294/
chr5122899636122899639/340428/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/822241/
chr3146812666146812669/653416/
chr3116808386116808389/645238/
chr38918799989188002/474370/
chr137570811275708115/465036/
chr57329285273292855/447146/
chr21899744618997449/419470/
chr167637344976373452/406298/
chr119820368398203686/397925/
chr15284527952845282/397106/
Download the Full Merged Peak List




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