DNA Damage Atlas


GSM5508996-PreB-Lig4-12hrs-AsiSI-ENDseq-APH




Basic Information

Manual

Sample ID:   

SRR15370005


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Time:   

12hrs


Treatment Dose:   

5uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Targeted break:   

AsisI (12hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.025279



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3116808386116808389/736914/
chr3115888066115888069/700888/
chr3146812666146812669/641897/
chr38918799989188002/613207/
chr167637344976373452/485918/
chr137570811275708115/470186/
chr119820368398203686/461860/
chr57329285273292855/457873/
chr21899744618997449/446783/
chr13115090192115090195/444380/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/1071189/
chr3116808386116808389/786830/
chr3146812666146812669/776324/
chr38918799989188002/614534/
chr137570811275708115/614118/
chr21899744618997449/566761/
chr119820368398203686/564259/
chr57329285273292855/532333/
chr167637344976373452/476410/
chr4139192791139192794/472444/
Download the Full Merged Peak List




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