DNA Damage Atlas


GSM5508997-PreB-Lig4-12hrs-AsiSI-ENDseq-POLAi




Basic Information

Manual

Sample ID:   

SRR15370006


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

POLA inhibitor


Treatment Time:   

12hrs


Treatment Dose:   

1uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Targeted break:   

AsisI (12hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.029429



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/853141/
chr3116808386116808389/830353/
chr3146812666146812669/767572/
chr38918799989188002/689752/
chr57329285273292855/600645/
chr167637344976373452/583832/
chr13115090192115090195/560202/
chr119820368398203686/556777/
chr21899744618997449/542525/
chr137570811275708115/538167/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/1.16984e+06/
chr3146812666146812669/904176/
chr3116808386116808389/870758/
chr137570811275708115/668111/
chr38918799989188002/656610/
chr57329285273292855/655958/
chr21899744618997449/611972/
chr119820368398203686/610167/
chr4139192791139192794/576795/
chr167637344976373452/530724/
Download the Full Merged Peak List




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