DNA Damage Atlas


GSM5509001-PreB-Lig4-18hrs-AsisI-ENDseq-HU




Basic Information

Manual

Sample ID:   

SRR15370010


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Hydroxyurea


Treatment Time:   

18hrs


Treatment Dose:   

10mM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.03552



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr38918799989188002/573417/
chr3115888066115888069/517783/
chr3116808386116808389/444289/
chr119820368398203686/308823/
chr21899744618997449/276223/
chr11430987814309881/257740/
chr5122899636122899639/256700/
chr158172964181729644/235666/
chr3146812666146812669/234288/
chr167637344976373452/220936/
Download the Full Peak List




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