DNA Damage Atlas


GSM5509002-PreB-Lig4-18hrs-AsisI-ENDseq-control-for-HU




Basic Information

Manual

Sample ID:   

SRR15370011


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.021556



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr38918799989188002/419617/
chr3115888066115888069/382964/
chr3116808386116808389/312310/
chr119820368398203686/204809/
chr5122899636122899639/201942/
chr158172964181729644/199098/
chr11430987814309881/192864/
chr21899744618997449/185595/
chr57329285273292855/164744/
chr1130716976130716979/157474/
Download the Full Peak List




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