DNA Damage Atlas


GSM5509004-PreB-Lig4-18hrs-AsisI-ENDseq-50uM-APH




Basic Information

Manual

Sample ID:   

SRR15370013


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.120017



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/53251/
chr57329285273292855/53240/
chr2156144262156144265/53182/
chr38918799989188002/52711/
chr3116808386116808389/52573/
chr195352894153528944/52344/
chr137570811275708115/49782/
chr167637344976373452/49380/
chr4139192791139192794/48817/
chr3139074689139074692/46612/
Download the Full Peak List




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