DNA Damage Atlas


GSM5509005-PreB-Lig4-18hrs-AsisI-ENDseq-5uM-APH




Basic Information

Manual

Sample ID:   

SRR15370014


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

5uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.055023



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr38918799989188002/112488/
chr195352894153528944/107684/
chr2156144262156144265/107589/
chr57329285273292855/106093/
chr3115888066115888069/102731/
chr167637344976373452/98011/
chr137570811275708115/97874/
chr3116808386116808389/97853/
chr4139192791139192794/97653/
chr3139074689139074692/95609/
Download the Full Peak List




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