DNA Damage Atlas


GSM5509009-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone1-APH




Basic Information

Manual

Sample ID:   

SRR15370018


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

5uM


Genotype:   

Lig4-/-53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.354739



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr38918799989188002/258410/
chr3116808386116808389/256452/
chr3115888066115888069/222990/
chr167637344976373452/219888/
chr56480283164802834/192293/
chr11430987814309881/184678/
chr119820368398203686/182747/
chr21899744618997449/173000/
chr5122899636122899639/162978/
chr535964013596404/160113/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3116808386116808389/172013/
chr38918799989188002/160434/
chr3115888066115888069/159468/
chr167637344976373452/149369/
chr11430987814309881/123194/
chr119820368398203686/121129/
chr56480283164802834/115976/
chr21899744618997449/114812/
chr5122899636122899639/103533/
chr535964013596404/95612.4/
Download the Full Merged Peak List




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