DNA Damage Atlas


GSM5509011-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone1-POLAi




Basic Information

Manual

Sample ID:   

SRR15370020


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

POLA inhibitor


Treatment Time:   

18hrs


Treatment Dose:   

1uM


Genotype:   

Lig4-/-53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.174721



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3116808386116808389/227353/
chr38918799989188002/218072/
chr167637344976373452/187290/
chr3115888066115888069/184650/
chr56480283164802834/182404/
chr109926416399264166/164549/
chr11430987814309881/156701/
chr535964013596404/154798/
chr119820368398203686/151750/
chr13115090192115090195/143464/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3116808386116808389/156964/
chr3115888066115888069/140268/
chr167637344976373452/137034/
chr38918799989188002/136275/
chr56480283164802834/114606/
chr11430987814309881/111041/
chr119820368398203686/106170/
chr21899744618997449/96237.8/
chr109926416399264166/94929/
chr535964013596404/94404.3/
Download the Full Merged Peak List




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