DNA Damage Atlas


GSM5509012-PreB-Lig4-18hrs-AsisI-ENDseq-compareWith-Lig4-53BP1-clone2




Basic Information

Manual

Sample ID:   

SRR15370021


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.123807



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr38918799989188002/48369/
chr167637344976373452/46371/
chr3116808386116808389/43656/
chr3115888066115888069/42750/
chr195352894153528944/41713/
chr3139074689139074692/40477/
chr11430987814309881/36702/
chr119820368398203686/35344/
chr21899744618997449/34847/
chr2156144262156144265/32993/
Download the Full Peak List




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