DNA Damage Atlas


GSM5509014-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone2-APH




Basic Information

Manual

Sample ID:   

SRR15370023


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

5uM


Genotype:   

Lig4-/-53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.135521



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/95946/
chr3116808386116808389/87574/
chr167637344976373452/78850/
chr195352894153528944/64804/
chr38918799989188002/62458/
chr11430987814309881/61711/
chr119820368398203686/59511/
chr3139074689139074692/57004/
chr21899744618997449/56623/
chr44665059046650593/54204/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3116808386116808389/172013/
chr38918799989188002/160434/
chr3115888066115888069/159468/
chr167637344976373452/149369/
chr11430987814309881/123194/
chr119820368398203686/121129/
chr56480283164802834/115976/
chr21899744618997449/114812/
chr5122899636122899639/103533/
chr535964013596404/95612.4/
Download the Full Merged Peak List




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