DNA Damage Atlas


GSM5509016-PreB-Lig4-G2-6hrs-AsisI-ENDseq




Basic Information

Manual

Sample ID:   

SRR15370025


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

6hrs


Cell Phase:   

G2


Targeted break:   

AsisI (6hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.011175



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/1784980/
chr195352894153528944/1380420/
chr57329285273292855/1368420/
chr159939343499393437/1140700/
chr2156144262156144265/1132510/
chr23223600532236008/1083360/
chr137570811275708115/1061390/
chr1125435718125435721/988108/
chr3116808386116808389/967399/
chr3146812666146812669/949247/
Download the Full Peak List




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