DNA Damage Atlas


GSM5509017-PreB-Lig4-G2-6hrs-AsisI-ENDseq-APH




Basic Information

Manual

Sample ID:   

SRR15370026


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Time:   

6hrs


Treatment Dose:   

5uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

6hrs


Cell Phase:   

G2


Targeted break:   

AsisI (6hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.011232



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/1438820/
chr57329285273292855/1391070/
chr195352894153528944/1327520/
chr137570811275708115/1236020/
chr3116808386116808389/1100430/
chr159939343499393437/1085330/
chr23223600532236008/1064780/
chr2156144262156144265/1044370/
chr3146812666146812669/1005790/
chr38918799989188002/1002720/
Download the Full Peak List




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