DNA Damage Atlas


GSM5509020-PreB-WT-G2-6hrs-AsisI-ENDseq




Basic Information

Manual

Sample ID:   

SRR15370029


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

6hrs


Cell Phase:   

G2


Targeted break:   

AsisI (6hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.278521



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/39664/
chr155088950250889505/36751/
chr1143739618143739621/29973/
chr1125435718125435721/27604/
chr2156144262156144265/24450/
chr12111039091111039094/22676/
chr195352894153528944/21143/
chr3145989049145989052/20763/
chr159939343499393437/20282/
chr23223600532236008/16722/
Download the Full Peak List




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