DNA Damage Atlas


GSM5509023-PreB-WT-asyn-6hrs-AsisI-ENDseq-APH




Basic Information

Manual

Sample ID:   

SRR15370032


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Time:   

6hrs


Treatment Dose:   

5uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

6hrs


Targeted break:   

AsisI (6hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.007769



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr155088950250889505/146532/
chr3145989049145989052/115935/
chr9121477512121477515/115235/
chr1143739618143739621/109220/
chr1125435718125435721/105110/
chr2156144262156144265/100539/
chr12111039091111039094/94806/
chr195352894153528944/94344/
chr159939343499393437/93046/
chr23223600532236008/92285/
Download the Full Peak List




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