DNA Damage Atlas


GSM5509024-PreB-Lig4-12hrs-AsisI-ENDseq-control-for-DNA2i-EXO1i




Basic Information

Manual

Sample ID:   

SRR15370033


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Targeted break:   

AsisI (12hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001677



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/1193460/
chr3146812666146812669/1137040/
chr3116808386116808389/941631/
chr137570811275708115/771452/
chr57329285273292855/766381/
chr4139192791139192794/661514/
chr2156144262156144265/635371/
chr15284527952845282/621989/
chr137327200373272006/606769/
chr1184732391184732394/589466/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/1095614/
chr3146812666146812669/1009132/
chr3116808386116808389/829964/
chr137570811275708115/723246/
chr57329285273292855/709154/
chr4139192791139192794/609850/
chr2156144262156144265/582731/
chr15284527952845282/549053/
chr21899744618997449/544392/
chr1184732391184732394/538135/
Download the Full Merged Peak List




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