DNA Damage Atlas


GSM5509033-PreB-Lig4-12hrs-AsisI-ENDseq-DNA2i-rep2




Basic Information

Manual

Sample ID:   

SRR15370042


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

DNA2 inhibitor


Treatment Time:   

12hrs


Treatment Dose:   

2uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Targeted break:   

AsisI (12hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001186



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/1146120/
chr3146812666146812669/1018020/
chr3116808386116808389/818277/
chr57329285273292855/788654/
chr4139192791139192794/744357/
chr2156144262156144265/718592/
chr137570811275708115/711977/
chr195352894153528944/656190/
chr159939343499393437/633609/
chr3139074689139074692/623031/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/1261415/
chr3146812666146812669/1111235/
chr3116808386116808389/934064/
chr57329285273292855/807770/
chr4139192791139192794/748500/
chr137570811275708115/731626/
chr2156144262156144265/721086/
chr15284527952845282/652455/
chr195352894153528944/622153/
chr159939343499393437/622010/
Download the Full Merged Peak List




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