DNA Damage Atlas


GSM5509034-PreB-Lig4-12hrs-AsisI-ENDseq-EXO1i-rep2




Basic Information

Manual

Sample ID:   

SRR15370043


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

EXO1 inhibitor


Treatment Time:   

12hrs


Treatment Dose:   

20uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Targeted break:   

AsisI (12hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.038983



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/473702/
chr3146812666146812669/439002/
chr3116808386116808389/376692/
chr137570811275708115/325698/
chr57329285273292855/290214/
chr159939343499393437/288893/
chr4139192791139192794/279535/
chr2156144262156144265/258294/
chr9121477512121477515/236657/
chr137327200373272006/229007/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/586348/
chr3146812666146812669/510579/
chr3116808386116808389/475472/
chr137570811275708115/417543/
chr159939343499393437/365858/
chr57329285273292855/329382/
chr4139192791139192794/317314/
chr2156144262156144265/288434/
chr137327200373272006/285902/
chr23223600532236008/275402/
Download the Full Merged Peak List




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