DNA Damage Atlas


GSM5509037-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-DNA2i-rep2




Basic Information

Manual

Sample ID:   

SRR15370046


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

DNA2 inhibitor


Treatment Time:   

12hrs


Treatment Dose:   

2uM


Genotype:   

Lig4-/-53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Targeted break:   

AsisI (12hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001516



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/1880330/
chr3146812666146812669/1312960/
chr3116808386116808389/1233700/
chr57329285273292855/901362/
chr137570811275708115/811684/
chr21899744618997449/745204/
chr4139192791139192794/722152/
chr9121477512121477515/720205/
chr38918799989188002/710877/
chr1184732391184732394/681520/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/1494285/
chr3146812666146812669/1.07623e+06/
chr3116808386116808389/1.06852e+06/
chr57329285273292855/754848/
chr137570811275708115/676996/
chr9121477512121477515/638134/
chr21899744618997449/619444/
chr4139192791139192794/611504/
chr109926416399264166/605837/
chr137327200373272006/590870/
Download the Full Merged Peak List




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