DNA Damage Atlas


GSM5509040-PreB-Lig4-Rev7-18hrs-AsisI-ENDseq




Basic Information

Manual

Sample ID:   

SRR15370050


Source Project ID:   

GSE181669

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-Rev7-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18hrs


Cell Phase:   

G1


Targeted break:   

AsisI (18hrs)


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.046977



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/230611/
chr3116808386116808389/179172/
chr3146812666146812669/140221/
chr38918799989188002/122483/
chr137570811275708115/91068/
chr119820368398203686/88074/
chr21899744618997449/83572/
chr109926416399264166/80916/
chr15284527952845282/77472/
chr11430987814309881/76714/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3115888066115888069/291504/
chr3116808386116808389/231386/
chr3146812666146812669/182352/
chr38918799989188002/175635/
chr119820368398203686/127704/
chr109926416399264166/121771/
chr21899744618997449/121126/
chr167637344976373452/113575/
chr137570811275708115/111070/
chr57329285273292855/110638/
Download the Full Merged Peak List




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