DNA Damage Atlas

GSM5552059-HCT116_cells_siCtrl_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR15680627


Source Project ID:   

GSE183147

Cell Type:   

HCT116


Organism:   

Homo sapiens


Genotype:   

control


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000105


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1623906746239108162390873101.124+
chr616052161416052224416052183478.0107-
chrUn_gl00022015288815678215362774.8565+
chrUn_gl00022010880611271910965573.3175+
chr417085801709484170895272.1754+
chrUn_gl00022015697916038715905970.4711+
chr1266450836664517256645137170.2614+
chrUn_gl00022011295611639111508769.3181+
chr482515232825155848251545061.5573-
chr1577910723779113667791093859.8667-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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