DNA Damage Atlas

GSM5552060-HCT116_cells_siCtrl_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR15680628


Source Project ID:   

GSE183147

Cell Type:   

HCT116


Organism:   

Homo sapiens


Genotype:   

control


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00033


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12664511166645178866451371247.947+
chr1623907386239114962390871212.038+
chr15779106957791116477910940208.557-
chr4170847617094071708956159.969+
chr6160521364160522244160521755133.027+
rDNA113471344612378114.145+
chrX784554447845610678455899113.37+
chrUn_gl000220112922116610113587111.661-
chrUn_gl000220108727112880110432102.854+
chr6_mann_hap4121811412188871218617100.456+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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