DNA Damage Atlas

GSM5552061-HCT116_cells_siDDX41_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR15680629


Source Project ID:   

GSE183147

Cell Type:   

HCT116


Organism:   

Homo sapiens


Genotype:   

siRNA knockdown of DDX41


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000176


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220152790156690153627128.315+
chrUn_gl000220108815112782109655125.894+
chrUn_gl000220156884160412159059119.57+
chrUn_gl000220112910116668115087112.413+
chr417087471709344170895361.9355+
chr616052161516052208216052183153.5036-
chrUn_gl00022010079510837610370546.8203+
chr1266450874664515956645137146.2531+
chr1577910731779111297791086945.3125+
chrUn_gl00021680222812558071042.9141-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab