DNA Damage Atlas

GSM5552062-HCT116_cells_siDDX41_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR15680630


Source Project ID:   

GSE183147

Cell Type:   

HCT116


Organism:   

Homo sapiens


Genotype:   

siRNA knockdown of DDX41


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000098


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220108751112776109655102.196+
chrUn_gl000220152724156760153627100.412+
chrUn_gl000220156882160336159059100.29+
chrUn_gl00022011287411643411600997.3034-
chr417084981709250170895660.3795+
chr616052153516052219716052175560.1949+
chr1266450919664518566645137158.3722+
chrUn_gl00022010087210844310370540.9718+
chr6_mann_hap412181131218838121861737.3613+
chr250626794506271365062692436.5546+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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