DNA Damage Atlas


GSM5563654-Reb1-AA-0h-rep2




Basic Information

Manual

Sample ID:   

SRR15744309


Source Project ID:   

GSE183622

Organism:   

Saccharomyces cerevisiae


Strain:   

W303


Treatment:   

Rapamycin + MMS


Treatment Time:   

1hr + 10mins


Treatment Dose:   

1ug/ml Rapamycin + 0.4% MMS


Genotype:   

WT-AA REB1-FRB-KanMX6


Harvested Time:   

repair time: 0 h


Layout:   

SINGLE


Instrument model:   

Ion Torrent Proton


Technique:   

NMP-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII45969746048846003312272.8/
chrM162771658116417907.331/
chrM204892085920647823.498/
chrM140111453614167812.988/
chrM618316207561905800.816/
chrM792268007779620753.629/
chrM595926012259788715.011/
chrM738357454574258615.574/
chrM365983703636759498.22/
chrM260542661126346489.224/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII45969746048846003312272.8/
chrM162821650116417940.112/
chrM618316207561905800.816/
chrM792828007779620758.768/
chrM596196012259788735.243/
chrM738357454574258615.574/
chrM260962659926346528.502/
chrM366203703436759501.477/
chrM726677327396479.931/
chrM417204193541810463.597/
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab