DNA Damage Atlas

GSM5600464-Drosophila_Adult-4hr-CPD_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR16100886


Source Project ID:   

GSE184926

Cell Type:   

Drosophila Adults


Organism:   

Drosophila melanogaster


Strain:   

w1118


Treatment:   

UVB


Treatment Dose:   

1200J/m2


Harvested Time:   

repair time: 4hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-CPD


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrY97379397582597490334.4177/
chr3R21368624213718212137084224.0693/
chr2R10694751075597107503423.4204/
chr3R31575473315765563157608322.2257/
chr3L17613413176184831761481221.9998/
chr3R10310334103127311031106221.7047/
chr2R96559489657472965694121.4528/
chr2R10890901093243109014321.1984/
chr2R50224750431450276821.1354/
chr3L25514852553372255277720.992/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY97379397582597490334.4177/
chr3R21368624213718212137084224.0693/
chr2R10694751075475107503423.8966/
chr3L17613413176183221761481222.2194/
chr3R10310334103126871031106222.03/
chr2R10799061081967108112921.9786/
chr2R10958441097703109646421.9709/
chr2R12640981266479126571721.8505/
chr2R10892191093243109014321.7838/
chr2R96559489657463965694121.5802/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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