DNA Damage Atlas

GSM5600465-Drosophila_Adult-4hr-6-4_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR16100887


Source Project ID:   

GSE184926

Cell Type:   

Drosophila Adults


Organism:   

Drosophila melanogaster


Strain:   

w1118


Treatment:   

UVB


Treatment Dose:   

1200J/m2


Harvested Time:   

repair time: 4hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-6-4


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrY97382497618497445333.8548/
chrY14174371418703141820128.3435/
chr3R21366892213719362136834827.9696/
chr2R50206150375550285124.8397/
chrY95607395818995735723.8508/
chr3L73608407363580736302823.1769/
chr3R19863721198696141986887821.5964/
chr3L24929258249299062492959021.5125/
chr3R10001607100037731000325721.3337/
chr2R10797481082414108029620.0439/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY97382497615797445334.2466/
chrY14174371418641141820129.3742/
chr3R21366937213718542136834828.5083/
chr2R50206150375550285124.8397/
chr3L73613367363580736302824.3885/
chrY95609695787095735723.9378/
chr3R19863806198694591986887822.1023/
chr3L24929258249298962492959021.8497/
chr3R10001607100037731000325721.3337/
chr2R10962251097038109653219.8455/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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