DNA Damage Atlas

GSM5600469-Drosophila_Adult-16hr-6-4_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR16100891


Source Project ID:   

GSE184926

Cell Type:   

Drosophila Adults


Organism:   

Drosophila melanogaster


Strain:   

w1118


Treatment:   

UVB


Treatment Dose:   

1200J/m2


Harvested Time:   

repair time: 16hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-6-4


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrY97372097618497566048.7391/
chrY14173301418703141813042.4699/
chrY95621595818995734932.3529/
chrY98893398964498943231.9753/
chr3R21367000213718222137048526.5608/
chr2R50034450398550285024.4517/
chrY30189993020150301968023.5213/
chr3R10001581100037611000321923.2455/
chr2R13291651330843132975222.8567/
chr2R13172891319570131781222.6727/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY97374797618497566049.2791/
chrY14173551418703141813043.2575/
chrY95621595818995734932.3529/
chr2R50210050398550285032.0391/
chrY30189993019913301968029.4305/
chr3R21367004213718222137048526.5829/
chr2R12451821247144124640525.563/
chr2R49403134941779494075925.4517/
chr2R13291671330719132975223.8177/
chr2R46739984676438467529923.6846/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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