DNA Damage Atlas


GSM5600470-Drosophila_Adult-2days-CPD_rep1




Basic Information

Manual

Sample ID:   

SRR16100892


Source Project ID:   

GSE184926

Cell Type:   

Drosophila Adults


Organism:   

Drosophila melanogaster


Strain:   

w1118


Treatment:   

UVB


Treatment Dose:   

1200J/m2


Harvested Time:   

repair time: 2days


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-CPD


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrY97371697592297445353.1303/
chrY30189993019864301936628.1961/
chr2R34921453493095349254327.3373/
chr2R50221650428350279227.0952/
chr2R13289561330749133006026.0718/
chr2L22281281222819892228178225.5175/
chr2R12179762121804421218005424.9077/
chr3L15744401157453751574476924.5769/
chr2R67251867356167310824.4667/
chr2L13314828133156521331518524.3918/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY97382697592297445355.8109/
chrY30189993019864301936628.1961/
chr2R50229050428350279227.8746/
chr2R34921453493095349254327.3373/
chr2R13289561330627133006025.6778/
chr2L22281281222819892228178225.5175/
chr3R29924511299254922992509724.862/
chr2R67251867356167310824.4667/
chr2R46574214658225465786024.1559/
chr2R35215243522928352190824.1271/
Download the Full Merged Peak List



Motif Analysis

Manual





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