DNA Damage Atlas

GSM5600477-Drosophila_Adult-xpc_ko-2hr-6-4_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR16100899


Source Project ID:   

GSE184926

Cell Type:   

Drosophila Adults


Organism:   

Drosophila melanogaster


Strain:   

XPC Kockout


Treatment:   

UVB


Treatment Dose:   

1200J/m2


Genotype:   

XPC-/-


Harvested Time:   

repair time: 2hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-6-4


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2R15309791153114431531097740.9355/
chr3R70881617089785708925030.6973/
chr2R15317460153194801531850028.8222/
chrY97375997623697498527.5105/
chr3R28483881284867282848498721.9616/
chr2R50200450428350298920.9829/
chrY95607195823495718620.837/
chr2R13431441346163134512318.4532/
chr2R10797971082587108035318.4253/
chr454504254703554561618.1554/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2R15309811153114361531097741.5421/
chr2R15317460153190131531850034.1278/
chr3R70881617089758708925031.2162/
chrY97377597623497498527.7119/
chr3R28484110284866652848498723.4265/
chr2R50203050388550298923.0937/
chr3L20187347201898372018788021.1413/
chrY95607195823295718620.8562/
chr2R13291651330715133014419.2051/
chr454504254655154561619.1724/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab