DNA Damage Atlas


GSM5600480-Drosophila_s2_cells-1_5hr-150um_cisplatin_rep1




Basic Information

Manual

Sample ID:   

SRR16100902


Source Project ID:   

GSE184926

Cell Type:   

Drosophila s2 cell


Organism:   

Drosophila melanogaster


Strain:   

wild type


Treatment:   

Cisplatin


Treatment Dose:   

150uM


Genotype:   

WT


Harvested Time:   

repair time: 1.5hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-Cisplatin


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3R978378297852759784541189.537/
chrX567576056780295676999181.889/
chr3R20850182089128208849192.0693/
chr2R63475246347923634772284.8641/
chrX21724488217248832172468474.0339/
chrX59024595905403590388171.8478/
chr2L21677929216823302167846853.1577/
chr2L29507829753629664245.3526/
chr410322141034697103317645.1616/
chr3R29219944292237192922122044.4992/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3R978378297852759784541189.537/
chrX567576056780295676999181.889/
chr3R20851752089086208849196.6978/
chr2R63475256347923634772285.0773/
chrX59024595905393590388172.0926/
chr2L21677929216823302167846853.1577/
chr2L29507829753629664245.3526/
chr410322141034697103317645.1616/
chr3L82748483349283123042.8551/
chr2R18627771186295721862832341.631/
Download the Full Merged Peak List



Motif Analysis

Manual





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