DNA Damage Atlas


GSM5631734-Abl-Lig4-G2-AsisI-DNAPKi-4h-ENDseq_rep1




Basic Information

Manual

Sample ID:   

SRR16477902


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

DNAPKi (NU7441)


Treatment Dose:   

10uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

4hrs


Cell Phase:   

G2


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002551



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/302559/
chr195352894153528944/280025/
chr3145989049145989052/273955/
chr155088950250889505/251480/
chr2156144262156144265/230060/
chr57329285273292855/223671/
chr159939343499393437/221680/
chr1143739618143739621/202844/
chr23223600532236008/193586/
chr162051698720516990/188655/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/382612/
chr3145989049145989052/351772/
chr155088950250889505/337864/
chr195352894153528944/309443/
chr159939343499393437/294166/
chr57329285273292855/290819/
chr2156144262156144265/285646/
chr1143739618143739621/276624/
chr23223600532236008/226190/
chr12111039091111039094/217342/
Download the Full Merged Peak List




Copyright © 2023 All Rights Reserved by Wu lab